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    LOC4339933 chaperone protein dnaJ GFA2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339933, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339933
    Gene description
    chaperone protein dnaJ GFA2, mitochondrial
    Locus tag
    OSNPB_060116800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 31.9), roots after flowering (RPKM 14.5) and 6 other tissues See more
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    Genomic context

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    See LOC4339933 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1083684..1088892, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (927285..932578, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene multiple organellar RNA editing factor 2, chloroplastic Neighboring gene formiminotransferase cyclodeaminase-like protein Neighboring gene uncharacterized LOC4339934 Neighboring gene uncharacterized LOC136356825

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heat shock protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein dnaJ GFA2, mitochondrial
    Names
    OSJNBa0019F11.32
    Os06g0116800
    putative GFA2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1083684..1088892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787731.3 → XP_015643217.1  chaperone protein dnaJ GFA2, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WRM5, B8B1N3, Q0DF36, Q5VRK6
      Conserved Domains (4) summary
      cd10747
      Location:195 → 412
      DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
      COG0484
      Location:71 → 420
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:75 → 137
      DnaJ; DnaJ domain
      pfam00684
      Location:223 → 283
      DnaJ_CXXCXGXG; DnaJ central domain
    Nucleotide Protein
    Heading Accession and Version

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