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    LOC4325791 calvin cycle protein CP12-1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325791, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325791
    Gene description
    calvin cycle protein CP12-1, chloroplastic
    Locus tag
    OSNPB_010303000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325791 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11229136..11230074, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11202617..11203344, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene homeobox protein knotted-1-like 1 Neighboring gene uncharacterized LOC107280832 Neighboring gene acidic endochitinase SE2 Neighboring gene uncharacterized LOC4323900

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of reductive pentose-phosphate cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calvin cycle protein CP12-1, chloroplastic
    Names
    B1146F03.30
    Os01g0303000
    P0035H10.18
    putative CP12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      11229136..11230074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760794.2 → XP_015616280.1  calvin cycle protein CP12-1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V247, A2WNX6, A2ZS87, Q0JND4, Q9FP25
      Conserved Domains (1) summary
      cl14670
      Location:3 → 124
      CP12; CP12 domain
    Nucleotide Protein
    Heading Accession and Version

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