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    LOC4334805 ankyrin repeat domain-containing protein 2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334805, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334805
    Gene description
    ankyrin repeat domain-containing protein 2A
    Locus tag
    OSNPB_030851700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 56.1), leaves after flowering (RPKM 39.1) and 5 other tissues See more
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    Genomic context

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    See LOC4334805 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36840180..36842754)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35861505..35864097)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene DNA repair RAD52-like protein 2, chloroplastic Neighboring gene uncharacterized LOC112938284 Neighboring gene uncharacterized LOC4334804 Neighboring gene pantoate--beta-alanine ligase-like Neighboring gene uncharacterized LOC4334807

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloroplast targeting sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 2A
    Names
    Os03g0851700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36840180..36842754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772907.2 → XP_015628393.1  ankyrin repeat domain-containing protein 2A

      UniProtKB/TrEMBL
      A2XP52, Q0DLQ7, Q10AH9, Q851Y1
      Conserved Domains (3) summary
      sd00045
      Location:230 → 256
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:230 → 322
      Ank_2; Ankyrin repeats (3 copies)
      cl17974
      Location:144 → 196
      STI1; STI1 domain
    Nucleotide Protein
    Heading Accession and Version

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