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    LOC4341716 CASP-like protein 2C1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341716, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4341716
    Gene description
    CASP-like protein 2C1
    Locus tag
    OSNPB_060656300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsCASPL2C1
    Expression
    Broad expression in flowers (RPKM 18.5), flower buds (RPKM 17.3) and 5 other tissues See more
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    Genomic context

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    See LOC4341716 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26937152..26941028)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene F-box protein AFR Neighboring gene (R)-mandelonitrile lyase-like Neighboring gene uncharacterized LOC112939258 Neighboring gene probable 4-coumarate--CoA ligase 4 Neighboring gene uncharacterized LOC4341719

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CASP-like protein 2C1; cASP-like protein 2C1
    Names
    LOC_Os06g44610
    P0460H04.29
    P0709F06.50
    integral membrane protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402921.1 → NP_001389850.1  cASP-like protein 2C1

      Status: VALIDATED

      Source sequence(s)
      AU095967, CI032760, CI034816, CI238993, CI702320
      UniProtKB/Swiss-Prot
      A0A0P0WZT2, Q67W83
      UniProtKB/TrEMBL
      B8B0Y5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26937152..26941028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786186.1 → XP_015641672.1  CASP-like protein 2C1

      UniProtKB/Swiss-Prot
      Q67W83
      Conserved Domains (1) summary
      pfam04535
      Location:40 → 164
      DUF588; Domain of unknown function (DUF588)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67W83.1 GenPept UniProtKB/Swiss-Prot:Q67W83

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