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    LOC4330828 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330828, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330828
    Gene description
    photosystem I chlorophyll a/b-binding protein 5, chloroplastic
    Locus tag
    OSNPB_020764500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 37.0), flowers (RPKM 18.8) and 4 other tissues See more
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    Genomic context

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    See LOC4330828 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32694874..32697186, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32199540..32201717, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene ethylene-responsive transcription factor ERF109 Neighboring gene uncharacterized LOC136355399

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem I chlorophyll a/b-binding protein 5, chloroplastic
    Names
    Os02g0764500
    P0539D10.17
    chlorophyll a-b binding protein 4, chloroplastic
    putative light-harvesting chlorophyll-a/b protein of photosystem I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32694874..32697186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767819.2 → XP_015623305.1  photosystem I chlorophyll a/b-binding protein 5, chloroplastic

      UniProtKB/TrEMBL
      B8AJ38, B9F350, Q6Z7Q1
      Conserved Domains (1) summary
      PLN00147
      Location:1 → 261
      PLN00147; light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
    Nucleotide Protein
    Heading Accession and Version

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