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    LOC4326349 late embryogenesis abundant protein 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326349, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326349
    Gene description
    late embryogenesis abundant protein 19-like
    Locus tag
    OSNPB_010571100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1129G05.1; B1129G05.2
    Expression
    Broad expression in roots before flowering (RPKM 24.3), roots after flowering (RPKM 8.5) and 5 other tissues See more
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    Genomic context

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    See LOC4326349 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22492778..22498778, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21922036..21928050, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene IQ domain-containing protein IQM1 Neighboring gene mitochondrial carrier protein CoAc1 Neighboring gene uncharacterized LOC4326350 Neighboring gene heat stress transcription factor A-6a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    late embryogenesis abundant protein 19-like; uncharacterized protein LOC4326349
    Names
    Os01g0571100
    Os01g0571166
    ZmGR2c-like
    putative ZmGR2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22492778..22498778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765688.2 → XP_015621174.1  late embryogenesis abundant protein 19-like isoform X1

      UniProtKB/TrEMBL
      A2WRL7, A2ZUJ9

    2. XM_015765689.3 → XP_015621175.1  late embryogenesis abundant protein 19-like isoform X1

      UniProtKB/TrEMBL
      A2WRL7, A2ZUJ9

    3. XM_015765691.3 → XP_015621177.1  uncharacterized protein LOC4326349 isoform X2

      UniProtKB/TrEMBL
      A2WRM1, B7EEF6, Q657C2
    Nucleotide Protein
    Heading Accession and Version

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