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    LOC4338950 uncharacterized LOC4338950 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338950, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4338950
    Gene description
    uncharacterized LOC4338950
    Locus tag
    OSNPB_050447700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338950 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22075481..22077650, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21963793..21966031, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene auxin transporter-like protein 2 Neighboring gene mediator of RNA polymerase II transcription subunit 13 Neighboring gene uncharacterized LOC112939064 Neighboring gene uncharacterized LOC136356460

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338950
    Names
    Os05g0447700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22075481..22077650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785092.3 → XP_015640578.1  uncharacterized protein LOC4338950 isoform X2

      UniProtKB/TrEMBL
      B9FJB5, Q0DHR4, Q688J0
      Conserved Domains (2) summary
      TIGR02521
      Location:366 → 460
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      sd00006
      Location:390 → 421
      TPR; TPR repeat [structural motif]

    2. XM_066310525.1 → XP_066166622.1  uncharacterized protein LOC4338950 isoform X1

      UniProtKB/TrEMBL
      B9FJB5, Q0DHR4, Q688J0
    Nucleotide Protein
    Heading Accession and Version

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