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    LOC4334112 binding partner of ACD11 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334112, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334112
    Gene description
    binding partner of ACD11 1
    Locus tag
    OSNPB_030748900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 20.8), flowers (RPKM 15.6) and 6 other tissues See more
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    Genomic context

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    See LOC4334112 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31707949..31711993)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30825179..30829300)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein NAR1 Neighboring gene DExH-box ATP-dependent RNA helicase DExH3 Neighboring gene putative ammonium transporter 4 member 1 Neighboring gene uncharacterized LOC4334113

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    binding partner of ACD11 1
    Names
    Os03g0748900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31707949..31711993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772510.3 → XP_015627996.1  binding partner of ACD11 1

      UniProtKB/TrEMBL
      A0A5S6RCU4, B8AJW2, Q0DNK1, Q10CV5, Q8W301
      Conserved Domains (1) summary
      PLN03120
      Location:15 → 278
      PLN03120; nucleic acid binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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