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    LOC4325621 aspartate aminotransferase, cytoplasmic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325621, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325621
    Gene description
    aspartate aminotransferase, cytoplasmic-like
    Locus tag
    OSNPB_010760600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 444.3), mature seeds (RPKM 256.4) and 6 other tissues See more
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    Genomic context

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    See LOC4325621 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32603775..32608349, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31998727..32003685, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 11 Neighboring gene uncharacterized LOC4325620 Neighboring gene homeobox-leucine zipper protein ROC9-like Neighboring gene probable protein ABIL5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L. Song J, et al. DNA Res, 1996 Oct 31. PMID 9039500
    2. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartate aminotransferase, cytoplasmic
    Names
    LOC_Os01g55540
    P0460E08.21
    P0512C01.10
    Transaminase A
    putative aspartate aminotransferase
    NP_001388396.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401467.1 → NP_001388396.1  aspartate aminotransferase, cytoplasmic

      Status: VALIDATED

      Source sequence(s)
      AK103586, CI112403
      UniProtKB/Swiss-Prot
      P37833, Q5JMF4, Q7F594
      UniProtKB/TrEMBL
      A0A0P0V8J5, A0A8J8YM40, A1YQJ2, A2WVA6, A2ZY17, Q0JJ47

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32603775..32608349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P37833.1 GenPept UniProtKB/Swiss-Prot:P37833

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials