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    LOC4323965 stress-response A/B barrel domain-containing protein HS1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323965, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4323965
    Gene description
    stress-response A/B barrel domain-containing protein HS1
    Locus tag
    OSNPB_010516600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SP1
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 31.1), roots before flowering (RPKM 28.6) and 6 other tissues See more
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    Genomic context

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    See LOC4323965 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18284560..18287219)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene stress-response A/B barrel domain-containing protein HS1 Neighboring gene UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Neighboring gene ABC transporter G family member 37-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in pollen tube adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stress-response A/B barrel domain-containing protein HS1
    Names
    B1108H10.11-1
    Os01g0516600
    probable protein Pop3
    putative stress-responsive protein
    stress-responsive protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18284560..18287219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765045.2 → XP_015620531.1  stress-response A/B barrel domain-containing protein HS1

      UniProtKB/TrEMBL
      A0A0P0V3N9, B8A9C0, B9EX75, Q7XBH1, Q8LQD2
      Conserved Domains (1) summary
      pfam07876
      Location:11 → 107
      Dabb; Stress responsive A/B Barrel Domain
    Nucleotide Protein
    Heading Accession and Version

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