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    LOC4324542 AMSH-like ubiquitin thioesterase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324542, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324542
    Gene description
    AMSH-like ubiquitin thioesterase 3
    Locus tag
    OSNPB_010499300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 18.2), roots after flowering (RPKM 16.8) and 6 other tissues See more
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    Genomic context

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    See LOC4324542 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (17769965..17777970, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17210271..17218305, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355153 Neighboring gene uncharacterized LOC136355335 Neighboring gene uncharacterized LOC4324541 Neighboring gene uncharacterized LOC136354906 Neighboring gene uncharacterized LOC9271963

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal-dependent deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AMSH-like ubiquitin thioesterase 3
    Names
    B1111E11.40
    Os01g0499300
    STAM binding protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      17769965..17777970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766494.3 → XP_015621980.1  AMSH-like ubiquitin thioesterase 3

      UniProtKB/TrEMBL
      A0A0P0V2Y3, A0A9K3Y7A6, B9EX28, Q0JMI7, Q5QLJ2
      Conserved Domains (2) summary
      cd08066
      Location:342 → 516
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:24 → 109
      USP8_dimer; USP8 dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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