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    LOC4337756 transcription factor MYB61 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337756, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337756
    Gene description
    transcription factor MYB61
    Locus tag
    OSNPB_050140100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    myb16
    Expression
    Biased expression in flowers (RPKM 5.5), flower buds (RPKM 3.5) and 2 other tissues See more
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    Genomic context

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    See LOC4337756 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2326817..2329874)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2311593..2315818)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g07610 Neighboring gene uncharacterized LOC136356523 Neighboring gene uncharacterized LOC4337755 Neighboring gene uncharacterized LOC9268496 Neighboring gene RNA-binding protein Y14A-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice. Gao Y, et al. Nat Commun, 2020 Oct 15. PMID 33060584, Free PMC Article
    2. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice.
      Title: MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription factor MYB61
    Names
    MYB transcription factor
    Os05g0140100
    transcription factor MYB28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2326817..2329874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025705.2 → XP_025881490.1  transcription factor MYB61

      UniProtKB/TrEMBL
      A0A0N7KK44, A2Y082, Q0DKW2, Q688D6
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 427
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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