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    LOC4330329 brassinosteroid-responsive RING protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330329, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4330329
    Gene description
    brassinosteroid-responsive RING protein 1
    Locus tag
    OSNPB_020682300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1123_G04.7
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    Genomic context

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    See LOC4330329 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28375888..28376927, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27887211..27888277, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 6-like Neighboring gene uncharacterized LOC136355452 Neighboring gene protein TRANSPARENT TESTA GLABRA 1 Neighboring gene mitochondrial import inner membrane translocase subunit Tim13-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    brassinosteroid-responsive RING protein 1
    Names
    E3 ubiquitin-protein ligase RHA1B
    Os02g0682300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28375888..28376927 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768304.3 → XP_015623790.1  brassinosteroid-responsive RING protein 1

      UniProtKB/TrEMBL
      A0A0P0VN00, B8AGQ3, Q0DYM4, Q6EU38
      Conserved Domains (1) summary
      cl17238
      Location:92 → 135
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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