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    LOC4345723 putative pectinesterase/pectinesterase inhibitor 45 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345723, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345723
    Gene description
    putative pectinesterase/pectinesterase inhibitor 45
    Locus tag
    OSNPB_080450200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1005_H01.20
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    Genomic context

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    See LOC4345723 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (22120258..22122688, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21981613..21984100, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351450 Neighboring gene pectinesterase Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B Neighboring gene transcription factor MYB77

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pectinesterase/pectinesterase inhibitor 45
    Names
    Os08g0450200
    putative pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      22120258..22122688 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793350.3 → XP_015648836.1  putative pectinesterase/pectinesterase inhibitor 45

      UniProtKB/TrEMBL
      A0A0P0XGL3, A2YVS4, Q6ZLF5
      Conserved Domains (1) summary
      PLN02745
      Location:5 → 663
      PLN02745; Putative pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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