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    LOC4326008 probable ubiquitin-conjugating enzyme E2 23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326008, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326008
    Gene description
    probable ubiquitin-conjugating enzyme E2 23
    Locus tag
    OSNPB_010125900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 18.0), flower buds (RPKM 17.8) and 6 other tissues See more
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    Genomic context

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    See LOC4326008 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1429134..1435426)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1421693..1427945)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 37 Neighboring gene uncharacterized LOC9271781 Neighboring gene actin-interacting protein 1-2 Neighboring gene multicopper oxidase LPR1 homolog 1-like Neighboring gene multicopper oxidase LPR1 homolog 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin-conjugating enzyme E2 23
    Names
    Os01g0125900
    P0037C04.36
    P0044F08.17
    ubiquitin-conjugating enzyme -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1429134..1435426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764636.3 → XP_015620122.1  probable ubiquitin-conjugating enzyme E2 23 isoform X1

      UniProtKB/TrEMBL
      Q9AWU5
      Conserved Domains (1) summary
      cd00195
      Location:834 → 962
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_015764654.3 → XP_015620140.1  probable ubiquitin-conjugating enzyme E2 23 isoform X2

      UniProtKB/TrEMBL
      Q9AWU5
      Conserved Domains (1) summary
      cd00195
      Location:833 → 961
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_015764661.3 → XP_015620147.1  probable ubiquitin-conjugating enzyme E2 23 isoform X3

      UniProtKB/TrEMBL
      Q9AWU5
      Conserved Domains (1) summary
      cd00195
      Location:809 → 937
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    4. XM_015764668.3 → XP_015620154.1  probable ubiquitin-conjugating enzyme E2 23 isoform X4

      UniProtKB/TrEMBL
      A0A0P0UY07, Q0JR20, Q5ZCB9, Q9AWU5
      Conserved Domains (1) summary
      cd00195
      Location:808 → 936
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    5. XM_066311945.1 → XP_066168042.1  probable ubiquitin-conjugating enzyme E2 23 isoform X2

      UniProtKB/TrEMBL
      Q9AWU5

    6. XM_066311950.1 → XP_066168047.1  probable ubiquitin-conjugating enzyme E2 23 isoform X4

      UniProtKB/TrEMBL
      A0A0P0UY07, Q0JR20, Q5ZCB9, Q9AWU5

    7. XM_015764646.3 → XP_015620132.1  probable ubiquitin-conjugating enzyme E2 23 isoform X1

      UniProtKB/TrEMBL
      Q9AWU5
      Conserved Domains (1) summary
      cd00195
      Location:834 → 962
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
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