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    LOC4345932 uncharacterized WD repeat-containing protein C2A9.03 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345932, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4345932
    Gene description
    uncharacterized WD repeat-containing protein C2A9.03
    Locus tag
    OSNPB_080497600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 97.6), roots after flowering (RPKM 45.6) and 6 other tissues See more
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    Genomic context

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    See LOC4345932 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24715951..24719472)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24575567..24579160)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 12 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH6 Neighboring gene WPP domain-interacting protein 1 Neighboring gene tricin synthase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized WD repeat-containing protein C2A9.03; uncharacterized protein LOC4345932
    Names
    Os08g0497600
    P0026F07.19
    putative GAMYB-binding protein
    putative WD-40 repeat family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24715951..24719472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795561.2 → XP_015651047.1  uncharacterized WD repeat-containing protein C2A9.03 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XHL4, B8BC38, B9G1L9, Q7F8T9
      Conserved Domains (2) summary
      sd00039
      Location:221 → 260
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:264 → 412
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015795558.2 → XP_015651044.1  uncharacterized protein LOC4345932 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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