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    LOC4344523 40S ribosomal protein S13-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344523, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4344523
    Gene description
    40S ribosomal protein S13-1
    Locus tag
    OSNPB_080117200
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344523 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (967539..969886, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (956369..958702, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-1 Neighboring gene 28 kDa ribonucleoprotein, chloroplastic Neighboring gene 40S ribosomal protein S13-2-like Neighboring gene probable calcium-binding protein CML7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Sasaki T, et al. Plant J, 1994 Oct. PMID 7987417
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS15z
    Names
    LOC_Os08g02400
    P0470F10.17
    putative 40S RIBOSOMAL PROTEIN S13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403354.1 → NP_001390283.1  small ribosomal subunit protein uS15z

      Status: PROVISIONAL

      Source sequence(s)
      CI294901, CI521738, D22866
      UniProtKB/Swiss-Prot
      Q0J8E1, Q69UI2
      UniProtKB/TrEMBL
      A6MZM9, B8BAG2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      967539..969886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69UI2.2 GenPept UniProtKB/Swiss-Prot:Q69UI2

    Gene LinkOut

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