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    LOC4346346 uncharacterized LOC4346346 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346346, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346346
    Gene description
    uncharacterized LOC4346346
    Locus tag
    OSNPB_080564500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 32.6), flower buds (RPKM 32.2) and 6 other tissues See more
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    Genomic context

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    See LOC4346346 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28420686..28422816, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28272281..28274501, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ABC transporter F family member 1 Neighboring gene ABC transporter B family member 1 Neighboring gene putative kinase-like protein TMKL1 Neighboring gene uncharacterized LOC136351308

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346346
    Names
    Os08g0564500
    P0705A05.114
    zinc finger protein 593

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28420686..28422816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792862.3 → XP_015648348.1  uncharacterized protein LOC4346346

      UniProtKB/TrEMBL
      A0A0P0XJD6, A0A8J8XQH3, A2YY79, A3BVU4, Q7EZL0
      Conserved Domains (2) summary
      COG5112
      Location:8 → 112
      UFD2; U1-like Zn-finger-containing protein [General function prediction only]
      sd00020
      Location:66 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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