U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4349815 uncharacterized LOC4349815 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349815, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4349815
    Gene description
    uncharacterized LOC4349815
    Locus tag
    OSNPB_110154900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    osZIP-2a
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4349815 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2606556..2609346)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2560822..2563684)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 90 Neighboring gene uncharacterized LOC107279287 Neighboring gene putative CBL-interacting protein kinase 27 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene probable F-box protein At2g36090

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity. Nantel A, et al. J Biol Chem, 1996 Dec 6. PMID 8940135
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4349815
    Names
    DNA-binding factor of bZIP class
    Os11g0154900

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2606556..2609346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760299.3 → XP_015615785.1  uncharacterized protein LOC4349815 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KSG4, Q2RAE8, Q53QH0
      Conserved Domains (1) summary
      smart00338
      Location:124 → 188
      BRLZ; basic region leucin zipper

    2. XM_066305118.1 → XP_066161215.1  uncharacterized protein LOC4349815 isoform X2

      UniProtKB/TrEMBL
      Q2RAE8, Q53QH0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials