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    LOC4340154 phosphatidylglycerophosphate phosphatase PTPMT2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340154, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340154
    Gene description
    phosphatidylglycerophosphate phosphatase PTPMT2
    Locus tag
    OSNPB_060152000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340154 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2843492..2846752)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2685133..2688537)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene ATP-dependent 6-phosphofructokinase 3 Neighboring gene profilin LP04-like Neighboring gene B-box zinc finger protein 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylglycerophosphate phosphatase PTPMT2
    Names
    Os06g0152000
    putative dual specificity protein phosphatase DSP8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2843492..2846752
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786996.3 → XP_015642482.1  phosphatidylglycerophosphate phosphatase PTPMT2

      UniProtKB/TrEMBL
      A2Y9G0, A3B8G3
      Conserved Domains (1) summary
      cd14524
      Location:55 → 199
      PTPMT1; protein-tyrosine phosphatase mitochondrial 1
    Nucleotide Protein
    Heading Accession and Version

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