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    LOC4338302 protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338302, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338302
    Gene description
    protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic
    Locus tag
    OSNPB_050291700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338302 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (12900565..12906444, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (12833533..12839415, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136356634 Neighboring gene uncharacterized LOC136356497 Neighboring gene uncharacterized LOC107280944 Neighboring gene uncharacterized LOC136356635 Neighboring gene uncharacterized LOC4338303

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic
    Names
    Os05g0291700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      12900565..12906444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785362.2 → XP_015640848.1  protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WK69, A0A0P0WKD6, B8AW41, Q0DJF9
      Conserved Domains (1) summary
      PLN03209
      Location:85 → 310
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    Nucleotide Protein
    Heading Accession and Version

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