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    LOC4335170 senescence-specific cysteine protease SAG39 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335170, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335170
    Gene description
    senescence-specific cysteine protease SAG39
    Locus tag
    OSNPB_040208200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 1.4), flowers (RPKM 1.4) and 1 other tissue See more
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    Genomic context

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    See LOC4335170 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (7250359..7251816)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276855 Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene putative FBD-associated F-box protein At5g53635 Neighboring gene F-box/LRR-repeat protein At3g26922

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    senescence-specific cysteine protease SAG39
    Names
    Os04g0208200
    putative cysteine protease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7250359..7251816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778767.2 → XP_015634253.1  senescence-specific cysteine protease SAG39

      UniProtKB/TrEMBL
      A3AR40, Q2TN87, Q7XWE8
      Conserved Domains (2) summary
      smart00848
      Location:40 → 97
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:129 → 348
      Peptidase_C1; Papain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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