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    LOC4338914 actin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338914, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338914
    Gene description
    actin-1
    Locus tag
    OSNPB_050438800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    actin
    Expression
    Ubiquitous expression in milk grains (RPKM 170.2), mature seeds (RPKM 147.7) and 6 other tissues See more
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    Genomic context

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    See LOC4338914 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21607560..21611030, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21500740..21504244, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene fructose-1,6-bisphosphatase, cytosolic Neighboring gene histone H3.2 Neighboring gene RING-H2 finger protein ATL72 Neighboring gene pentatricopeptide repeat-containing protein At2g20540

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    actin-1
    Names
    Os05g0438800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21607560..21611030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784227.3 → XP_015639713.1  actin-1

      UniProtKB/TrEMBL
      A2Y534, B9FJ68, B9FK20, Q75HX0
      Conserved Domains (1) summary
      cl17037
      Location:1 → 376
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version

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