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    LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339910, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339910
    Gene description
    ruBisCO large subunit-binding protein subunit beta, chloroplastic
    Locus tag
    OSNPB_060114000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 331.3), roots after flowering (RPKM 206.7) and 6 other tissues See more
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    Genomic context

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    See LOC4339910 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (967427..972885, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (811043..816539, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356941 Neighboring gene uncharacterized LOC9267527 Neighboring gene ADP-ribosylation factor Neighboring gene transfer RNA aspartic acid (anticodon GUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ruBisCO large subunit-binding protein subunit beta, chloroplastic
    Names
    Os06g0114000
    P0541H01.20
    RuBisCo subunit binding-protein beta subunit
    putative chaperonin 60 beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      967427..972885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787279.3 → XP_015642765.1  ruBisCO large subunit-binding protein subunit beta, chloroplastic

      UniProtKB/TrEMBL
      B9FR63, Q0DF58, Q9LWT6
      Conserved Domains (1) summary
      PLN03167
      Location:1 → 601
      PLN03167; Chaperonin-60 beta subunit; Provisional

    2. XM_015787280.3 → XP_015642766.1  ruBisCO large subunit-binding protein subunit beta, chloroplastic

      UniProtKB/TrEMBL
      B9FR63, Q0DF58, Q9LWT6
      Conserved Domains (1) summary
      PLN03167
      Location:1 → 601
      PLN03167; Chaperonin-60 beta subunit; Provisional
    Nucleotide Protein
    Heading Accession and Version

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