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    LOC4327861 aspartic proteinase oryzasin-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327861, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327861
    Gene description
    aspartic proteinase oryzasin-1-like
    Locus tag
    OSNPB_010663400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 354.2), flowers (RPKM 62.4) and 1 other tissue See more
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    Genomic context

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    See LOC4327861 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27668384..27674797, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27085814..27092327, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280768 Neighboring gene protein RADIALIS-like 3 Neighboring gene mannan endo-1,4-beta-mannosidase 1-like Neighboring gene pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial Neighboring gene GBF-interacting protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartic proteinase oryzasin-1-like
    Names
    Os01g0663400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27668384..27674797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766421.3 → XP_015621907.1  aspartic proteinase oryzasin-1-like

      UniProtKB/TrEMBL
      A0A0N7KDG5, A0A0P0V679, A0A8J8XJI2, B8A762, B9EYG5, Q0JKM8
      Conserved Domains (3) summary
      cd06098
      Location:88 → 520
      phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
      pfam03489
      Location:331 → 364
      SapB_2; Saposin-like type B, region 2
      pfam05184
      Location:396 → 431
      SapB_1; Saposin-like type B, region 1

    2. XM_015766420.3 → XP_015621906.1  aspartic proteinase oryzasin-1-like

      UniProtKB/TrEMBL
      A0A0N7KDG5, A0A0P0V679, A0A8J8XJI2, B8A762, B9EYG5, Q0JKM8
      Conserved Domains (3) summary
      cd06098
      Location:88 → 520
      phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
      pfam03489
      Location:331 → 364
      SapB_2; Saposin-like type B, region 2
      pfam05184
      Location:396 → 431
      SapB_1; Saposin-like type B, region 1
    Nucleotide Protein
    Heading Accession and Version

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