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    LOC4330901 uncharacterized LOC4330901 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330901, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4330901
    Gene description
    uncharacterized LOC4330901
    Locus tag
    OSNPB_020776700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CTMyb1; OJ1534_E09.1-1; OJ1534_E09.1-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 34.0), leaves before flowering (RPKM 28.9) and 6 other tissues See more
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    Genomic context

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    See LOC4330901 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33323233..33328097)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32827836..32832770)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355481 Neighboring gene protein BIG GRAIN 1-like A Neighboring gene replication protein A 70 kDa DNA-binding subunit A-like Neighboring gene growth-regulating factor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice. Gu M, et al. J Exp Bot, 2017 Jun 15. PMID 28549191, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330901
    Names
    MYB transcription factor-like
    Myb transcription factor
    OSJNBb0013K01.35-1
    OSJNBb0013K01.35-2
    Os02g0776700
    carboxyl-terminal Myb1 short polypeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33323233..33328097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307420.1 → XP_066163517.1  uncharacterized protein LOC4330901 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VQD4, B8AJG9, B9F3I5, Q6YZ61

    2. XM_015770334.3 → XP_015625820.1  uncharacterized protein LOC4330901 isoform X1

      UniProtKB/TrEMBL
      B8AJG9
      Conserved Domains (1) summary
      cd11660
      Location:504 → 554
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    3. XM_015770337.3 → XP_015625823.1  uncharacterized protein LOC4330901 isoform X1

      UniProtKB/TrEMBL
      B8AJG9
      Conserved Domains (1) summary
      cd11660
      Location:504 → 554
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    4. XM_066307421.1 → XP_066163518.1  uncharacterized protein LOC4330901 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VQD4, B8AJG9, B9F3I5, Q6YZ61

    5. XM_015770338.3 → XP_015625824.1  uncharacterized protein LOC4330901 isoform X1

      UniProtKB/TrEMBL
      B8AJG9
      Conserved Domains (1) summary
      cd11660
      Location:504 → 554
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    6. XM_066307422.1 → XP_066163519.1  uncharacterized protein LOC4330901 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VQD4, B8AJG9, B9F3I5, Q6YZ61

    7. XM_015770333.3 → XP_015625819.1  uncharacterized protein LOC4330901 isoform X1

      UniProtKB/TrEMBL
      B8AJG9
      Conserved Domains (1) summary
      cd11660
      Location:504 → 554
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    8. XM_015770339.3 → XP_015625825.1  uncharacterized protein LOC4330901 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VQD4, B8AJG9, B9F3I5, Q6YZ61
      Conserved Domains (1) summary
      cd11660
      Location:503 → 553
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    9. XM_015770336.3 → XP_015625822.1  uncharacterized protein LOC4330901 isoform X1

      UniProtKB/TrEMBL
      B8AJG9
      Conserved Domains (1) summary
      cd11660
      Location:504 → 554
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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