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    LOC4334534 mitochondrial Rho GTPase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334534, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334534
    Gene description
    mitochondrial Rho GTPase 1
    Locus tag
    OSNPB_030810600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 44.9), flower buds (RPKM 40.5) and 6 other tissues See more
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    Genomic context

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    See LOC4334534 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34900454..34906619, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33927613..33933839, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene nudix hydrolase 16, mitochondrial Neighboring gene mitochondrial Rho GTPase 1 Neighboring gene zerumbone synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial Rho GTPase 1
    Names
    Os03g0810600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34900454..34906619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777339.3 → XP_015632825.1  mitochondrial Rho GTPase 1

      UniProtKB/TrEMBL
      A2XN85, A3ANX5, Q0DMF9, Q6ATR5
      Conserved Domains (4) summary
      cd01892
      Location:421 → 602
      Miro2; Mitochondrial Rho family 2 (Miro2), C-terminal
      cd01893
      Location:14 → 180
      Miro1; Mitochondrial Rho family 1 (Miro1), N-terminal
      pfam08355
      Location:351 → 416
      EF_assoc_1; EF hand associated
      pfam08356
      Location:230 → 312
      EF_assoc_2; EF hand associated
    Nucleotide Protein
    Heading Accession and Version

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