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    LOC4336253 probable E3 ubiquitin-protein ligase ARI8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336253, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4336253
    Gene description
    probable E3 ubiquitin-protein ligase ARI8
    Locus tag
    OSNPB_040492100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 30.9), milk grains (RPKM 29.9) and 6 other tissues See more
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    Genomic context

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    See LOC4336253 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25078281..25085564)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24581449..24588732)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 4.5 Neighboring gene inositol transporter 1 Neighboring gene uncharacterized LOC107280649 Neighboring gene DNA-directed RNA polymerase III subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ARI8
    Names
    Os04g0492100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25078281..25085564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781074.3 → XP_015636560.1  probable E3 ubiquitin-protein ligase ARI8

      UniProtKB/TrEMBL
      B8AVV6, B9FFV9, Q01IA7, Q7XRI6, Q7XSB9
      Conserved Domains (3) summary
      smart00647
      Location:203 → 265
      IBR; In Between Ring fingers
      cd16623
      Location:134 → 184
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:287 → 326
      IBR; IBR domain, a half RING-finger domain
    Nucleotide Protein
    Heading Accession and Version

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