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    LOC4327172 acidic endochitinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327172, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327172
    Gene description
    acidic endochitinase
    Locus tag
    OSNPB_010660200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    chitinase
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    Genomic context

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    See LOC4327172 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27468044..27469276)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26885468..26886720)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327168 Neighboring gene F-box/kelch-repeat protein At3g61590 Neighboring gene plastidial pyruvate kinase 2 Neighboring gene 3'-5' exonuclease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice class III chitinase homologues isolated by random cloning of rice cDNAs. Nagasaki H, et al. DNA Res, 1997 Dec 31. PMID 9501993
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acidic endochitinase
    Names
    Os01g0660200
    P0445H04.12
    P0684E06.23
    acidic class III chitinase OsChib3a
    putative chitinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27468044..27469276
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767190.3 → XP_015622676.1  acidic endochitinase

      UniProtKB/TrEMBL
      A2WX14, A2ZW76, O22080, O49829, Q7F4M8
      Conserved Domains (1) summary
      cd02877
      Location:27 → 299
      GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    Nucleotide Protein
    Heading Accession and Version

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