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    LOC4336389 beta-glucosidase 16-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336389, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336389
    Gene description
    beta-glucosidase 16-like
    Locus tag
    OSNPB_040513400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BGLU16; Os4bglu16
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    Genomic context

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    See LOC4336389 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26164591..26173487, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25658234..25667058)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 13 Neighboring gene beta-glucosidase 16 Neighboring gene beta-glucosidase 18-like Neighboring gene uncharacterized LOC136356351

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-glucosidase 16
    Names
    LOC_Os04g43390
    OSJNBa0004N05.24
    OSJNBb0070J16.1
    NP_001406594.1
    XP_015636694.1
    XP_015636695.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419665.1 → NP_001406594.1  beta-glucosidase 16 precursor

      Status: VALIDATED

      Source sequence(s)
      AK066850, AP014960, CB642854, CB674065, CI188021, CI572818, CI644596
      UniProtKB/Swiss-Prot
      A0A0P0WC95, A0A0P0WCR8, Q0JBS0, Q7XSK2
      UniProtKB/TrEMBL
      B8ARR8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26164591..26173487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781209.2 → XP_015636695.1  beta-glucosidase 16 isoform X2

      UniProtKB/TrEMBL
      A3AVJ3
      Conserved Domains (1) summary
      cl23725
      Location:30 → 512
      Glyco_hydro; Glycosyl hydrolases

    2. XM_015781208.2 → XP_015636694.1  beta-glucosidase 16 isoform X1

      UniProtKB/TrEMBL
      A3AVJ3
      Conserved Domains (1) summary
      cl23725
      Location:30 → 533
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XSK2.2 GenPept UniProtKB/Swiss-Prot:Q7XSK2

    Gene LinkOut

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