U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC9271540 cytochrome P450 94C1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271540, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9271540
    Gene description
    cytochrome P450 94C1
    Locus tag
    OSNPB_010858350
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    gl1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9271540 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37722372..37726284, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37097364..37099186, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein ATCSA-1 Neighboring gene uncharacterized LOC4324762 Neighboring gene transcription initiation factor TFIID subunit 12 Neighboring gene uncharacterized LOC4325056

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome P450 94C1
    Names
    Os01g0858350
    P0683F02.21
    putative cytochrome P450-dependent fatty acid hydroxylase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37722372..37726284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768296.3 → XP_015623782.1  cytochrome P450 94C1

      UniProtKB/TrEMBL
      A0A0P0VAP3, A2WX61, A2ZZR4, Q94DD8
      Conserved Domains (1) summary
      PLN02426
      Location:10 → 507
      PLN02426; cytochrome P450, family 94, subfamily C protein

    2. XM_066305961.1 → XP_066162058.1  cytochrome P450 94C1

      UniProtKB/TrEMBL
      A0A0P0VAP3, A2WX61, A2ZZR4, Q94DD8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials