U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4330310 SPX domain-containing membrane protein Os02g45520-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330310, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4330310
    Gene description
    SPX domain-containing membrane protein Os02g45520-like
    Locus tag
    OSNPB_020678200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_07922; P0663F07.1
    Expression
    Broad expression in roots after flowering (RPKM 46.4), leaves before flowering (RPKM 30.3) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4330310 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28184529..28190437)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27696292..27702195)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330309 Neighboring gene protein MAIN-LIKE 2-like Neighboring gene protein HOTHEAD Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sPX domain-containing membrane protein Os02g45520
    Names
    LOC_Os02g45520
    OSJNBb0005A04.25
    SPX (SYG1/Pho81/XPR1) domain-containing protein-like
    SPX domain-containing membrane protein Os02g45520

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416823.1 → NP_001403752.1  sPX domain-containing membrane protein Os02g45520

      Status: VALIDATED

      Source sequence(s)
      AK241359, AU030644, CF315759, CI175514, CI636957
      UniProtKB/Swiss-Prot
      A0A0P0VMY4, A2X8A7, A3AA38, Q0DYP3, Q6EPQ3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28184529..28190437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767524.3 → XP_015623010.1  sPX domain-containing membrane protein Os02g45520 isoform X3

      Conserved Domains (2) summary
      cd06174
      Location:142 → 316
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:142 → 526
      MFS_1; Major Facilitator Superfamily

    2. XM_066307038.1 → XP_066163135.1  sPX domain-containing membrane protein Os02g45520 isoform X4

    3. XM_015767520.3 → XP_015623006.1  sPX domain-containing membrane protein Os02g45520 isoform X1

      Conserved Domains (4) summary
      cd06174
      Location:257 → 431
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      pfam03105
      Location:4 → 143
      SPX; SPX domain
      pfam07690
      Location:257 → 641
      MFS_1; Major Facilitator Superfamily

    4. XM_066307037.1 → XP_066163134.1  sPX domain-containing membrane protein Os02g45520 isoform X3

    5. XM_015767521.3 → XP_015623007.1  sPX domain-containing membrane protein Os02g45520 isoform X1

      Conserved Domains (4) summary
      cd06174
      Location:257 → 431
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      pfam03105
      Location:4 → 143
      SPX; SPX domain
      pfam07690
      Location:257 → 641
      MFS_1; Major Facilitator Superfamily

    6. XM_066307035.1 → XP_066163132.1  sPX domain-containing membrane protein Os02g45520 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0VMY4, A2X8A7, A3AA38, Q0DYP3, Q6EPQ3

    7. XM_066307039.1 → XP_066163136.1  sPX domain-containing membrane protein Os02g45520 isoform X4

    8. XM_015767522.3 → XP_015623008.1  sPX domain-containing membrane protein Os02g45520 isoform X1

      Conserved Domains (4) summary
      cd06174
      Location:257 → 431
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      pfam03105
      Location:4 → 143
      SPX; SPX domain
      pfam07690
      Location:257 → 641
      MFS_1; Major Facilitator Superfamily

    9. XM_066307036.1 → XP_066163133.1  sPX domain-containing membrane protein Os02g45520 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0VMY4, A2X8A7, A3AA38, Q0DYP3, Q6EPQ3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EPQ3.1 GenPept UniProtKB/Swiss-Prot:Q6EPQ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials