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    LOC4327632 SUPPRESSOR OF ABI3-5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327632, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327632
    Gene description
    SUPPRESSOR OF ABI3-5
    Locus tag
    OSNPB_010170100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0583G08.4
    Expression
    Ubiquitous expression in roots after flowering (RPKM 3.4), leaves after flowering (RPKM 2.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327632 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3618380..3624543)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3609580..3615767)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene galactinol--sucrose galactosyltransferase-like Neighboring gene uncharacterized LOC136354947 Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 Neighboring gene uncharacterized LOC136353883

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SUPPRESSOR OF ABI3-5; uncharacterized protein LOC4327632
    Names
    Os01g0170100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3618380..3624543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769105.3 → XP_015624591.1  SUPPRESSOR OF ABI3-5 isoform X1

      UniProtKB/TrEMBL
      B8ADG7, B9ET31, Q5VQM8
      Conserved Domains (2) summary
      smart00443
      Location:407 → 447
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:12 → 61
      OCRE; OCRE domain

    2. XM_015769127.3 → XP_015624613.1  uncharacterized protein LOC4327632 isoform X4

      Conserved Domains (1) summary
      smart00443
      Location:325 → 365
      G_patch; glycine rich nucleic binding domain

    3. XM_015769143.3 → XP_015624629.1  uncharacterized protein LOC4327632 isoform X5

      Conserved Domains (1) summary
      smart00443
      Location:324 → 364
      G_patch; glycine rich nucleic binding domain

    4. XM_066306952.1 → XP_066163049.1  uncharacterized protein LOC4327632 isoform X3

    5. XM_066306951.1 → XP_066163048.1  uncharacterized protein LOC4327632 isoform X2

      UniProtKB/TrEMBL
      B8ADG7, B9ET31

    6. XM_066306953.1 → XP_066163050.1  uncharacterized protein LOC4327632 isoform X4

    7. XM_066306954.1 → XP_066163051.1  uncharacterized protein LOC4327632 isoform X5

    8. XM_015769115.3 → XP_015624601.1  SUPPRESSOR OF ABI3-5 isoform X1

      UniProtKB/TrEMBL
      B8ADG7, B9ET31, Q5VQM8
      Conserved Domains (2) summary
      smart00443
      Location:407 → 447
      G_patch; glycine rich nucleic binding domain
      cd16074
      Location:12 → 61
      OCRE; OCRE domain

    9. XM_066306955.1 → XP_066163052.1  uncharacterized protein LOC4327632 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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