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    LOC4328480 calcium-transporting ATPase 5, plasma membrane-type-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328480, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328480
    Gene description
    calcium-transporting ATPase 5, plasma membrane-type-like
    Locus tag
    OSNPB_020176700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0504A05.5
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    Genomic context

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    See LOC4328480 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4204766..4220270, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4195397..4210964, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene uncharacterized LOC4328479 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene uncharacterized LOC136355450

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type calcium transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-transporting ATPase 5, plasma membrane-type-like
    Names
    Os02g0176700
    calcium-transporting ATPase 8, plasma membrane-type
    putative calcium-transporting ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4204766..4220270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023244.2 → XP_025879029.1  calcium-transporting ATPase 5, plasma membrane-type-like

      UniProtKB/TrEMBL
      Q6ETP2
      Conserved Domains (3) summary
      cd02081
      Location:176 → 930
      P-type_ATPase_Ca_PMCA-like; animal plasma membrane Ca2(+)-ATPases (PMCA), similar to human ATP2B1-4/PMCA1-4, and related Ca2(+)-ATPases including Saccharomyces cerevisiae vacuolar PMC1
      pfam00689
      Location:882 → 1059
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam12515
      Location:41 → 84
      CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain

    2. XM_015770644.3 → XP_015626130.1  calcium-transporting ATPase 5, plasma membrane-type-like

      UniProtKB/TrEMBL
      Q6ETP2
      Conserved Domains (3) summary
      cd02081
      Location:176 → 930
      P-type_ATPase_Ca_PMCA-like; animal plasma membrane Ca2(+)-ATPases (PMCA), similar to human ATP2B1-4/PMCA1-4, and related Ca2(+)-ATPases including Saccharomyces cerevisiae vacuolar PMC1
      pfam00689
      Location:882 → 1059
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam12515
      Location:41 → 84
      CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain

    3. XM_015770645.3 → XP_015626131.1  calcium-transporting ATPase 5, plasma membrane-type-like

      UniProtKB/TrEMBL
      Q6ETP2
      Conserved Domains (3) summary
      cd02081
      Location:176 → 930
      P-type_ATPase_Ca_PMCA-like; animal plasma membrane Ca2(+)-ATPases (PMCA), similar to human ATP2B1-4/PMCA1-4, and related Ca2(+)-ATPases including Saccharomyces cerevisiae vacuolar PMC1
      pfam00689
      Location:882 → 1059
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam12515
      Location:41 → 84
      CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain
    Nucleotide Protein
    Heading Accession and Version

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