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    LOC4349130 uncharacterized LOC4349130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349130, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349130
    Gene description
    uncharacterized LOC4349130
    Locus tag
    OSNPB_100518800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 22.7), milk grains (RPKM 21.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20752235..20761713)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20060862..20070537)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 Neighboring gene protein HLB1 Neighboring gene DNA excision repair protein ERCC-1 Neighboring gene AAA-ATPase At2g46620

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349130
    Names
    Os10g0518800
    germinal center kinase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      20752235..20761713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759112.3 → XP_015614598.1  uncharacterized protein LOC4349130

      UniProtKB/TrEMBL
      B8BHW3, B9G6M7, Q0IWC5, Q337B2
      Conserved Domains (1) summary
      cd06610
      Location:25 → 287
      STKc_OSR1_SPAK; Catalytic domain of the Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase
    Nucleotide Protein
    Heading Accession and Version

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