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    LOC4344969 protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344969, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344969
    Gene description
    protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic
    Locus tag
    OSNPB_080224300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARE1; OJ1006_H01.123
    Expression
    Broad expression in leaves before flowering (RPKM 13.6), flower buds (RPKM 6.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344969 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (7620100..7625480, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (7568535..7573960, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene YTH domain-containing protein ECT1 Neighboring gene glucan endo-1,3-beta-glucosidase 6 Neighboring gene 26S proteasome non-ATPase regulatory subunit 1 homolog A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic
    Names
    Os08g0224300
    chloroplast ABC1 repressor 1
    chloroplast envelope membrane protein
    putative heme binding protein cemA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      7620100..7625480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303585.1 → XP_066159682.1  protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KPG9, A0A8J8YBW9, B8BBZ2, B9FZN7, Q7F1V0

    2. XM_015792957.3 → XP_015648443.1  protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KPG9, A0A8J8YBW9, B8BBZ2, B9FZN7, Q7F1V0
      Conserved Domains (1) summary
      pfam03040
      Location:197 → 425
      CemA; CemA family
    Nucleotide Protein
    Heading Accession and Version

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