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    LOC4334501 uncharacterized LOC4334501 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334501, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334501
    Gene description
    uncharacterized LOC4334501
    Locus tag
    OSNPB_030806400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 4.7), flowers (RPKM 4.6) and 6 other tissues See more
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    Genomic context

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    See LOC4334501 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34660689..34664978, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33687990..33692324, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protochlorophyllide-dependent translocon component 52, chloroplastic Neighboring gene uncharacterized LOC136355813 Neighboring gene protochlorophyllide-dependent translocon component 52, chloroplastic Neighboring gene 5'-adenylylsulfate reductase-like 5 Neighboring gene uncharacterized LOC4334503

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334501
    Names
    Os03g0806400
    elongation factor P

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34660689..34664978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773275.3 → XP_015628761.1  uncharacterized protein LOC4334501 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y5Y7, A2XN49, A3ANU4, Q10BS5, Q84M44
      Conserved Domains (1) summary
      PRK00529
      Location:66 → 247
      PRK00529; elongation factor P; Validated

    2. XM_015773276.3 → XP_015628762.1  uncharacterized protein LOC4334501 isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y5Y7, A2XN49, A3ANU4, Q10BS5
      Conserved Domains (4) summary
      PRK00529
      Location:66 → 246
      PRK00529; elongation factor P; Validated
      cd04470
      Location:128 → 188
      S1_EF-P_repeat_1; S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with ...
      pfam08207
      Location:66 → 122
      EFP_N; Elongation factor P (EF-P) KOW-like domain
      pfam09285
      Location:191 → 246
      Elong-fact-P_C; Elongation factor P, C-terminal
    Nucleotide Protein
    Heading Accession and Version

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