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    LOC4325063 transcription factor LG2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325063, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325063
    Gene description
    transcription factor LG2-like
    Locus tag
    OSNPB_010859500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LG2; rLG2; OsLG2; OsbZIP11; OsJ_04144; P0679C12.3
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    Genomic context

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    See LOC4325063 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37808235..37815536, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37181463..37188644, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor ABI5 homolog Neighboring gene uncharacterized protein YnbD Neighboring gene F-box/LRR-repeat protein At1g67190 Neighboring gene uncharacterized LOC136355504

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor LG2
    Names
    LOC_Os01g64020
    Os01g0859500
    P0489B03.13
    Protein LIGULELESS 2 homolog
    Transcription factor LG2
    bZIP transcription factor 11
    putative basic leucine zipper protein
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428179.1 → NP_001415108.1  transcription factor LG2

      Status: VALIDATED

      Source sequence(s)
      AK101338, CB643022, CI270821
      UniProtKB/Swiss-Prot
      Q5N7C7
      UniProtKB/TrEMBL
      B8ACI5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37808235..37815536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310384.1 → XP_066166481.1  transcription factor LG2 isoform X2

      UniProtKB/Swiss-Prot
      Q5N7C7
      UniProtKB/TrEMBL
      B8ACI5

    2. XM_015761444.3 → XP_015616930.1  transcription factor LG2 isoform X1

      UniProtKB/TrEMBL
      B8ACI5
      Conserved Domains (2) summary
      cd14708
      Location:229 → 281
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:314 → 388
      DOG1; Seed dormancy control

    3. XM_015761450.3 → XP_015616936.1  transcription factor LG2 isoform X1

      UniProtKB/TrEMBL
      B8ACI5
      Conserved Domains (2) summary
      cd14708
      Location:229 → 281
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:314 → 388
      DOG1; Seed dormancy control
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N7C7.1 GenPept UniProtKB/Swiss-Prot:Q5N7C7

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