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    LOC4324964 uncharacterized LOC4324964 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324964, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4324964
    Gene description
    uncharacterized LOC4324964
    Locus tag
    OSNPB_010894600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324964 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39525092..39529112, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38893669..38897720, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324961 Neighboring gene fructokinase-1-like Neighboring gene uncharacterized LOC4324963 Neighboring gene uncharacterized LOC4324965 Neighboring gene probable membrane-associated 30 kDa protein, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function. Li Y, et al. Nat Commun, 2024 May 30. PMID 38816417, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function.
      Title: An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324964
    Names
    B1078G07.48-1
    B1078G07.48-2
    Os01g0894600
    P0696G06.12
    putative PIT1
    zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39525092..39529112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310265.1 → XP_066166362.1  uncharacterized protein LOC4324964 isoform X1

    2. XM_015766205.3 → XP_015621691.1  uncharacterized protein LOC4324964 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VBI2, A0A9K3Y7A2, Q0JGZ4, Q5JLV4, Q7F442
      Conserved Domains (3) summary
      smart00744
      Location:42 → 88
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:42 → 87
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:93 → 208
      DUF3675; Protein of unknown function (DUF3675)
    Nucleotide Protein
    Heading Accession and Version

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