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    LOC4349288 syndetin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349288, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349288
    Gene description
    syndetin
    Locus tag
    OSNPB_100546300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349288 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22042308..22051488)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21349910..21359159)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pistil-specific extensin-like protein Neighboring gene uncharacterized LOC4349287 Neighboring gene cyclin-dependent protein kinase inhibitor SMR1-like Neighboring gene carotene epsilon-monooxygenase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syndetin
    Names
    Os10g0546300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423098.1 → NP_001410027.1  syndetin

      Status: VALIDATED

      Source sequence(s)
      AK103033, AP014966, CB000417
      UniProtKB/TrEMBL
      Q0IVY6, Q336V4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22042308..22051488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304451.1 → XP_066160548.1  syndetin isoform X2

    2. XM_015758939.2 → XP_015614425.1  syndetin isoform X1

      UniProtKB/TrEMBL
      B9G6U9
      Conserved Domains (2) summary
      pfam10474
      Location:670 → 898
      DUF2451; Protein of unknown function C-terminus (DUF2451)
      cl19297
      Location:19 → 246
      Dor1; Dor1-like family
    Nucleotide Protein
    Heading Accession and Version

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