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    LOC4336001 WEB family protein At3g02930, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336001, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336001
    Gene description
    WEB family protein At3g02930, chloroplastic
    Locus tag
    OSNPB_040450900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 86.7), leaves after flowering (RPKM 13.2) and 1 other tissue See more
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    Genomic context

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    See LOC4336001 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22959595..22961670, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22466761..22469005, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 1 Neighboring gene histone H3.3 Neighboring gene uncharacterized LOC4336003 Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene uncharacterized LOC136356221

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    WEB family protein At3g02930, chloroplastic
    Names
    Os04g0450900
    myosin heavy chain, embryonic smooth muscle isoform

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22959595..22961670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780388.3 → XP_015635874.1  WEB family protein At3g02930, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0WAT1, Q01J94, Q7XV45
      Conserved Domains (1) summary
      TIGR02168
      Location:2 → 307
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015780389.3 → XP_015635875.1  WEB family protein At3g02930, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0WAT1, Q01J94, Q7XV45
      Conserved Domains (1) summary
      TIGR02168
      Location:2 → 307
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_015780387.3 → XP_015635873.1  WEB family protein At3g02930, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9FFG1, Q01J94
      Conserved Domains (1) summary
      TIGR02169
      Location:62 → 352
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
    Heading Accession and Version

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