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    LOC4332393 E3 ubiquitin-protein ligase RDUF2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332393, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4332393
    Gene description
    E3 ubiquitin-protein ligase RDUF2
    Locus tag
    OSNPB_030271600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332393 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9134686..9136166)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9084481..9085960)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g59600 Neighboring gene hsp70 nucleotide exchange factor FES1 Neighboring gene uncharacterized LOC4332392 Neighboring gene uncharacterized LOC136355549 Neighboring gene aspartic proteinase PCS1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RDUF2
    Names
    Os03g0271600
    putative zinc finger family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9134686..9136166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772526.2 → XP_015628012.1  E3 ubiquitin-protein ligase RDUF2

      UniProtKB/TrEMBL
      A2XF12, Q0DT31, Q84Q81
      Conserved Domains (3) summary
      cd16667
      Location:135 → 176
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam06547
      Location:192 → 264
      DUF1117; Protein of unknown function (DUF1117)
      pfam14369
      Location:7 → 36
      zinc_ribbon_9; zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version

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