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    LOC4325901 uncharacterized LOC4325901 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325901, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325901
    Gene description
    uncharacterized LOC4325901
    Locus tag
    OSNPB_010672700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 12.1), mature seeds (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    See LOC4325901 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28211944..28217617)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27624625..27630397)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 3-like Neighboring gene callose synthase 12 Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC4325902 Neighboring gene F-box/kelch-repeat protein At3g18720

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A) RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAMP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325901
    Names
    Os01g0672700
    P0007F06.20-1
    P0485G01.10-1
    non-canonical poly(A) RNA polymerase PAPD5
    polymerase (DNA directed) sigma-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28211944..28217617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766649.3 → XP_015622135.1  uncharacterized protein LOC4325901

      UniProtKB/TrEMBL
      A0A0P0V6C0, A0A5S6R742, Q0JKI4, Q5QMQ1
      Conserved Domains (1) summary
      COG5260
      Location:194 → 472
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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