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    LOC4324301 protein SOSEKI 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324301, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324301
    Gene description
    protein SOSEKI 5
    Locus tag
    OSNPB_010975000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 22.2), leaves before flowering (RPKM 2.8) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43732293..43733842, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (43078798..43080459, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 2, mitochondrial Neighboring gene soluble inorganic pyrophosphatase 4 Neighboring gene uncharacterized LOC112935997 Neighboring gene transcription factor MYB59 Neighboring gene uncharacterized LOC107281162

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein SOSEKI 5
    Names
    Os01g0975000
    P0459B04.16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43732293..43733842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757012.3 → XP_015612498.1  protein SOSEKI 5

      UniProtKB/TrEMBL
      A0A0P0VDM7, A3A217, Q0JFK4, Q5JL17
      Conserved Domains (1) summary
      pfam06136
      Location:39 → 304
      DUF966; Domain of unknown function (DUF966)
    Nucleotide Protein
    Heading Accession and Version

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