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    LOC4327814 pentatricopeptide repeat-containing protein At3g16610 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327814, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327814
    Gene description
    pentatricopeptide repeat-containing protein At3g16610
    Locus tag
    OSNPB_010977400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327814 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43849468..43852158)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (43195776..43198626)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene dnaJ protein P58IPK homolog B-like Neighboring gene transcription factor MYB44 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene E3 ubiquitin-protein ligase listerin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g16610
    Names
    Os01g0977400
    P0020E09.21
    vegetative storage protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43849468..43852158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775263.3 → XP_015630749.1  pentatricopeptide repeat-containing protein At3g16610

      UniProtKB/TrEMBL
      A2WZP8, A3A233
      Conserved Domains (2) summary
      PLN03077
      Location:71 → 811
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:379 → 404
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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