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    LOC9272625 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272625, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272625
    Gene description
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like
    Locus tag
    OSNPB_080393600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9272625 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18811735..18814334)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18675920..18678537)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351584 Neighboring gene uncharacterized LOC136351290 Neighboring gene uncharacterized LOC9268342 Neighboring gene uncharacterized LOC136351585 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like
    Names
    Os08g0393600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18811735..18814334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793607.3 → XP_015649093.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like

      Conserved Domains (1) summary
      PLN02838
      Location:32 → 252
      PLN02838; 3-hydroxyacyl-CoA dehydratase subunit of elongase
    Nucleotide Protein
    Heading Accession and Version

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