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    LOC4325275 heavy metal-associated isoprenylated plant protein 39 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325275, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325275
    Gene description
    heavy metal-associated isoprenylated plant protein 39
    Locus tag
    OSNPB_010678800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 18.1) and flowers (RPKM 2.1) See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28518036..28519051, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27929790..27931041, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene Albino Seedling Lethal1 Neighboring gene transcription factor-like protein DPB Neighboring gene uncharacterized LOC4325276 Neighboring gene uncharacterized LOC4325277

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heavy metal-associated isoprenylated plant protein 39
    Names
    B1144G04.30
    Os01g0678800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28518036..28519051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769242.3 → XP_015624728.1  heavy metal-associated isoprenylated plant protein 39

      UniProtKB/TrEMBL
      A0A0N7KDI1, A2WTS3, A2ZWI9, Q8S181
      Conserved Domains (1) summary
      pfam00403
      Location:3 → 53
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version

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