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    LOC4339960 FCS-Like Zinc finger 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339960, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339960
    Gene description
    FCS-Like Zinc finger 15
    Locus tag
    OSNPB_060125200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 26.9), leaves before flowering (RPKM 14.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1518277..1519418)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1361265..1362509)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281415 Neighboring gene putative disease resistance RPP13-like protein 2 Neighboring gene succinate dehydrogenase subunit 8B, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial Neighboring gene oligopeptide transporter 7 Neighboring gene uncharacterized LOC112939269 Neighboring gene oligopeptide transporter 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    FCS-Like Zinc finger 15
    Names
    Os06g0125200
    P0425F02.24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1518277..1519418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785948.3 → XP_015641434.1  FCS-Like Zinc finger 15

      UniProtKB/TrEMBL
      A0A0P0WSC0, A2Y8R3, A3B7X4, Q0DF11, Q5VS44
      Conserved Domains (1) summary
      pfam04570
      Location:39 → 82
      zf-FLZ; zinc-finger of the FCS-type, C2-C2
    Nucleotide Protein
    Heading Accession and Version

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