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    LOC4325277 uncharacterized LOC4325277 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325277, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325277
    Gene description
    uncharacterized LOC4325277
    Locus tag
    OSNPB_010679000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325277 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28526839..28534995)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27938764..27947045)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 39 Neighboring gene uncharacterized LOC4325276 Neighboring gene aspartic proteinase NANA, chloroplast Neighboring gene UPF0678 fatty acid-binding protein-like protein At1g79260

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325277
    Names
    B1144G04.33-1
    B1144G04.33-2
    Os01g0679000
    RNA polymerase III subunit-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28526839..28534995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306938.1 → XP_066163035.1  uncharacterized protein LOC4325277 isoform X1

    2. XM_066306939.1 → XP_066163036.1  uncharacterized protein LOC4325277 isoform X3

    3. XM_015779523.3 → XP_015635009.1  uncharacterized protein LOC4325277 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V6L2, A0A9K3Y7R2, B8A7K6, Q0JKF1, Q5QM91
      Conserved Domains (2) summary
      pfam05645
      Location:148 → 360
      RNA_pol_Rpc82; RNA polymerase III subunit RPC82
      pfam08221
      Location:9 → 66
      HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

    4. XM_015779580.3 → XP_015635066.1  uncharacterized protein LOC4325277 isoform X4

      UniProtKB/TrEMBL
      B8A7K6
      Conserved Domains (2) summary
      pfam05645
      Location:148 → 360
      RNA_pol_Rpc82; RNA polymerase III subunit RPC82
      pfam08221
      Location:9 → 66
      HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

    RNA

    1. XR_010738966.1 RNA Sequence

    2. XR_010738968.1 RNA Sequence

    3. XR_010738967.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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