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    LOC9270837 elongation factor Tu, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270837, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270837
    Gene description
    elongation factor Tu, chloroplastic
    Locus tag
    OSNPB_020595700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    tufA; OJ1126_D09.31-2
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    Genomic context

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    See LOC9270837 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23594430..23596160)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23111942..23113725)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329857 Neighboring gene isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial Neighboring gene eukaryotic translation initiation factor 4B1 Neighboring gene high-affinity nitrate transporter-activating protein 2.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of the chloroplast elongation factor EF-Tu cDNA of Oryza sativa L. Lee JH, et al. Mol Cells, 1999 Oct 31. PMID 10597036
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongation factor Tu, chloroplastic
    Names
    Os02g0595700
    chloroplast translational elongation factor Tu
    translational elongation factor Tu
    translational elongation factor Tu-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23594430..23596160
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771575.3 → XP_015627061.1  elongation factor Tu, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VL59, C7IYB2, Q6ZI53, Q8W2C3, Q9SEF8
      Conserved Domains (1) summary
      PLN03126
      Location:15 → 467
      PLN03126; Elongation factor Tu; Provisional
    Nucleotide Protein
    Heading Accession and Version

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